[Bioperl-l] TreeIO problem
dhoworth at mrc-lmb.cam.ac.uk
Fri Apr 16 06:16:02 EDT 2004
Allen Day wrote:
> there is a problem with your newick input, or its interaction with the
> TreeIO subsystem. from the bioperl cvs, this code works:
The most obvious difference is that there is no semicolon at the end of
both of Mikel's examples. That's an error and I believe that will be
enough to stop it working.
> however using the newick data you provide below, the while loop is never
> entered. here is the data i am using from the bioperl regression tests.
> On Thu, 15 Apr 2004, Mikel Ega wrote:
>>At the end I have produced a Dummy simple tree to see if distances
>>affected in anything:
>>And it doesn't work either.
>>The original tree was:
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