[Bioperl-l] blastz parser
jason at cgt.duhs.duke.edu
Fri Apr 16 16:08:08 EDT 2004
You can convert the blastz lav output to axt or psl with Jim Kent's
lavToPsl or lavToAxt.
Bio::SearchIO can parse psl or axt, Bio::Tools::Blat can also parse psl
output. (I think there is an off-by-one error in SearchIO::psl that Elliot
M reported but it hasn't been fixed yet).
On Fri, 16 Apr 2004, Karen Hayden wrote:
> Hello all,
> Is there a module to parse blastz output?
jason at cgt.mc.duke.edu
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