[Bioperl-l] Most used parts of Bioperl

Jason Stajich jason at cgt.duhs.duke.edu
Wed Apr 21 08:34:01 EDT 2004

Bio::Root::Root and Bio::Root::IO are of course used very heavily, but not
directly by users.

I would say Bio::SearchIO, Bio::SeqIO, Bio::AlignIO are all used very

I guess CVS + bugs might help you correlate how worked on a module is- but
not clear what you want to do with the information.

On Wed, 21 Apr 2004, Peter van Heusden wrote:

> Does anyone have a sense of what the most-used parts of Bioperl are? I
> imagine SeqIO, the core Seq object, but these are all guesses. I've had
> some ideas of trying to look for module names in the mailing list
> archives, or parsing info from the CVS repository, or looking at the
> Bugzilla database, but nothing definite. Any ideas welcome.
> Thanks,
> Peter
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Jason Stajich
Duke University
jason at cgt.mc.duke.edu

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