[Bioperl-l] Mapping between aligment position and reference (1st) sequence position for MAF files

avilella avilella at ebi.ac.uk
Wed Apr 21 13:02:24 EDT 2004


I was wondering which is the best way to get a mapping between the
alignment position of a MAF file and the reference sequence position, in
that case for the first individual in the file.

I would like to be able to associate the result of an analysis for a
position in a MAF alignment to the reference sequence.

If not being done before, which is the best place to implement that?



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