[Bioperl-l] xml converter

Jason Stajich jason at cgt.duhs.duke.edu
Mon Aug 2 08:22:37 EDT 2004

What schema do you want it to be in?  "XML" is not a format.

Currently there is limited support to convert BLAST reports to BSML.  I
expect the HMMER reports will generally make it into the same report
format.  See scripts/utilities/search2BSML.PLS which uses the
Bio::SearchIO::Writer::BSMLResultWriter module.

On Fri, 30 Jul 2004 rmaps005 at cib.csic.es wrote:

> hello,
> i am newbie at bioperl and was trying to convert a hmmer result to XML
> format.
> I found that there is a package to convert genbank to XML(gb2xml) , is
> there any for hmmer results?
> IlohaCIB
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Jason Stajich
Duke University
jason at cgt.mc.duke.edu

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