[Bioperl-l] organism restricted blast search

Paulo Almeida paulo.david at netvisao.pt
Thu Aug 5 09:54:51 EDT 2004


You need to add a parameter like this:

$Bio::Tools::Run::RemoteBlast::HEADER{'ENTREZ_QUERY'} = 'Homo sapiens [ORGN]';

For more information, read the synopsis here:



Pedro Antonio Reche wrote:

> Hi,
> I am interested in carrying out a blast (or parse a blast search) in a 
> way that only hits from a given organism will show. This is similar to 
> what the NCBI blast site does currently I wonder if someone knows how 
> to do it using bioperl. Thanks in advance for any help.
> Cheers 

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