[Bioperl-l] Re: sequences > 4000 chars getting truncated on update on Oracle

Hilmar Lapp hlapp at gnf.org
Wed Aug 11 12:18:25 EDT 2004


I believe I found a fix that doesn't hit performance (i.e., it doesn't 
force a load and re-serialization when the sequence actually has not 
changed). I just committed the fixes to bioperl-db, and I also added 
extensive testing of potentially problematic situations to simpleseq.t. 
The tests all pass ...

If you get a chance, give it a try.

Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757

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