[Bioperl-l] orthologous genes extracting

Paulo Almeida paulo.david at netvisao.pt
Mon Aug 16 12:47:19 EDT 2004

I have been using Ensmart, Ensembl's web interface for batch retrieval, 
at http://www.ensembl.org/Multi/martview
I think their orthologues are based on reciprocal BLASTs and sometimes 
also on synteny and whole genome alignment data.


Nathan (Nat) Goodman wrote:

>A word of caution:  HomoloGene includes many paralogs in its homology
>I, too, am looking for a data source somewhere that provides orthologs (for
>human, mouse, rat).  If anyone knows of one, please let me know!  If anyone
>wants to work on this, let me know also!
>Nat Goodman

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