[Bioperl-l] orthologous genes extracting
paulo.david at netvisao.pt
Mon Aug 16 12:47:19 EDT 2004
I have been using Ensmart, Ensembl's web interface for batch retrieval,
I think their orthologues are based on reciprocal BLASTs and sometimes
also on synteny and whole genome alignment data.
Nathan (Nat) Goodman wrote:
>A word of caution: HomoloGene includes many paralogs in its homology
>I, too, am looking for a data source somewhere that provides orthologs (for
>human, mouse, rat). If anyone knows of one, please let me know! If anyone
>wants to work on this, let me know also!
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