[Bioperl-l] Re: blast2gff.pl

Lincoln Stein lstein at cshl.edu
Mon Aug 16 17:39:32 EDT 2004

Hi Justin,

You know, I was absolutely sure that bioperl had a blast2gff script, 
but I can't find it.  So please send me your script and I will add it 
in.  Just make sure that the script has some POD documentation so 
that I don't have to write it!


On Monday 16 August 2004 02:42 am, you wrote:
> Hi Lincoln,
> Don't know if you remember me, I interviewed up at
> CSHL last year.
> I've been helping out with the Honey Bee Genome
> Project, and found it necessary to write a perl hack
> to turn BLAST result files into .gff files. Not sure
> if bioperl already has such a script, but I thought I
> would pass along mine in case it might be useful to
> others who use GBROWSE. It's beta code, and probably
> has a bug or two lurking. If you think it might be
> useful, I could go through it more thoroughly and
> refine it.
> Best regards,
> Justin Reese
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Lincoln D. Stein
Cold Spring Harbor Laboratory
1 Bungtown Road
Cold Spring Harbor, NY 11724

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