[Bioperl-l] Re: blast2gff.pl
chenn at cshl.edu
Mon Aug 16 17:45:26 EDT 2004
There is a script bp_search2gff.pl by Jason.
On Mon, 16 Aug 2004, Lincoln Stein wrote:
> Hi Justin,
> You know, I was absolutely sure that bioperl had a blast2gff script,
> but I can't find it. So please send me your script and I will add it
> in. Just make sure that the script has some POD documentation so
> that I don't have to write it!
> On Monday 16 August 2004 02:42 am, you wrote:
> > Hi Lincoln,
> > Don't know if you remember me, I interviewed up at
> > CSHL last year.
> > I've been helping out with the Honey Bee Genome
> > Project, and found it necessary to write a perl hack
> > to turn BLAST result files into .gff files. Not sure
> > if bioperl already has such a script, but I thought I
> > would pass along mine in case it might be useful to
> > others who use GBROWSE. It's beta code, and probably
> > has a bug or two lurking. If you think it might be
> > useful, I could go through it more thoroughly and
> > refine it.
> > Best regards,
> > Justin Reese
> > __________________________________
> > Do you Yahoo!?
> > Yahoo! Mail is new and improved - Check it out!
> > http://promotions.yahoo.com/new_mail
> Lincoln D. Stein
> Cold Spring Harbor Laboratory
> 1 Bungtown Road
> Cold Spring Harbor, NY 11724
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> Bioperl-l at portal.open-bio.org
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