[Bioperl-l] Bioperl Blast

Jason Stajich jason at cgt.duhs.duke.edu
Tue Aug 24 09:11:50 EDT 2004

What is your question - which module are you asking about?

I assume StandAloneBlast is up to date - people have reported bugs for
certain features that might not work.  It really needs a maintainer (and a
some re-writes to be more flexible for changes to cmdline options I would
say)  if we want to track all the changes that happen wrt cmdline options.

As for remote blast - you can set everything that the CGI needs if you
know what options you want to send in to the webserver - figuring out
those options of course is the fun part. This also needs a maintainer to
track them and document them.

On Fri, 20 Aug 2004, Neil C. Christopher wrote:

> I was wondering if the Blast API is up to date?  Does it work with the
> current blast?
> Please let me know ASAP.
> Thanks,
> Neil Christopher
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> Bioperl-l at portal.open-bio.org
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Jason Stajich
Duke University
jason at cgt.mc.duke.edu

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