[Bioperl-l] locuslink - gene positions?

hz5 at njit.edu hz5 at njit.edu
Mon Aug 30 09:22:20 EDT 2004

I believe that there is a flatfile in MapView ftp directory, some kind of md 
file have coordinate of genes relative to both chromosome and contigs.


Quoting "Fontaine, Burr R" <bfontain at iupui.edu>:

> I am trying to mirror portions of Locuslink and have figured out how to
> get all of the data elements I need from the locuslink module except for
> the gene starting postion (in bp coordinates). Chromosome coordinates
> would be best but contig coordinates are OK if there is a way to convert
> them. I've looked at the location modules but don't see any obvious
> answers there. Can someone help me figure out the best way to do this?
> Thanks in advance for your help.
> Burr Fontaine
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Haibo Zhang, PhD student
Computational Biology, NJIT & Rutgers University
Center for Applied Genomics, PHRI

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