[Bioperl-l] Bio::tools::primer3 and bio::seqfeature::primer
rob at salmonella.org
Fri Dec 10 11:33:34 EST 2004
This is already available:
Bio::Tools::Primer3->next_primer() returns a Bio::Seq::PrimedSeq object.
Take a look at the Bio::Seq::PrimedSeq docs to see how to write out a
sequence with it's primers attached.
On Dec 10, 2004, at 5:02 AM, Sean Davis wrote:
> I am running primer3 using bio::tools::run::primer3. I would like to
> add the resulting primers to my original sequence as sequence
> features. I can extract all the tags and build my own sequence
> feature (bio::seqfeature::primer), but the perldoc for
> bio::seqfeature::primer implies that it is designed to be integrated
> with bio::tools::primer3. I just want to make sure that there isn't
> an inheritance that I don't see before constructing my own
> Bio::Seqfeature::Primer from the Bio::Tools::Primer3 objects.
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