[Bioperl-l] Tabular BLAST output and SearchIO

michael watson (IAH-C) michael.watson at bbsrc.ac.uk
Mon Dec 13 05:44:58 EST 2004

Sorry, ignore me, I need to use the "blasttable" format.


-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of michael
watson (IAH-C)
Sent: 13 December 2004 10:26
To: Bioperl
Subject: [Bioperl-l] Tabular BLAST output and SearchIO


Do I have to do anything special with SearchIO objects to get them to
read NCBI blast output produced with the "-m 8" (tabular without comment
lines) option?  Because I'm using it as I would with a normal BLAST
output format and getting an undefined value when calling next_result()

(using bioperl 1.4 on Suse Linux)


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