[Bioperl-l] Tabular BLAST output and SearchIO

Jason Stajich jason.stajich at duke.edu
Mon Dec 13 08:35:00 EST 2004

I think you've already figured it out based on your other question but 
'blasttable' since it is hard to auto-detect this format we made it a 
separate SearchIO parser module.

On Dec 13, 2004, at 5:25 AM, michael watson ((IAH-C)) wrote:

> Hi
> Do I have to do anything special with SearchIO objects to get them to
> read NCBI blast output produced with the "-m 8" (tabular without 
> comment
> lines) option?  Because I'm using it as I would with a normal BLAST
> output format and getting an undefined value when calling next_result()
> (using bioperl 1.4 on Suse Linux)
> Thanks
> Mick
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Jason Stajich
jason.stajich at duke.edu

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