[Bioperl-l] Parsing TGICL-CAP3 ACE result files

Javier Forment Millet jforment at ibmcp.upv.es
Tue Dec 14 06:08:20 EST 2004


I have to parse CAP3 ACE result files obtained with the TGICL pipeline (TIGR
Gene Indices clustering tools). I know about the bioperl-1.4::Bio::Assembly
module for working with contig assemblies, but it seems to be Phrap-orientated.
Has anybody parsed CAP3 ACE result files with this module or a modification of
it? Is there another module available for parsing these files?

Thanks a lot,


Javier Forment Millet
Instituto de Biologia Molecular y Celular de Plantas (IBMCP)
Avenida de los Naranjos, s/n
46022 Valencia (SPAIN)
jforment at ibmcp.upv.es

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