[Bioperl-l] Parsing TGICL-CAP3 ACE result files
Marc.Logghe at devgen.com
Tue Dec 14 10:28:50 EST 2004
It is already quite old now, don't know what changes have been done in the mean time.
Have a try with the Bio::Assembly::IO::ace file attached.
This package I used for exactly the same purpose as you.
> -----Original Message-----
> From: Javier Forment Millet [mailto:jforment at ibmcp.upv.es]
> Sent: Tuesday, December 14, 2004 12:08 PM
> To: bioperl-l at portal.open-bio.org
> Subject: [Bioperl-l] Parsing TGICL-CAP3 ACE result files
> I have to parse CAP3 ACE result files obtained with the TGICL
> pipeline (TIGR
> Gene Indices clustering tools). I know about the
> module for working with contig assemblies, but it seems to be
> Has anybody parsed CAP3 ACE result files with this module or
> a modification of
> it? Is there another module available for parsing these files?
> Thanks a lot,
> Javier Forment Millet
> Instituto de Biologia Molecular y Celular de Plantas (IBMCP)
> Avenida de los Naranjos, s/n
> 46022 Valencia (SPAIN)
> jforment at ibmcp.upv.es
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
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