[Bioperl-l] Bio::SeqIO::staden::read problem
Aaron J. Mackey
amackey at pcbi.upenn.edu
Thu Dec 16 07:19:23 EST 2004
This error crops up when, in fact, bioperl-ext hasn't been fully,
successfully installed (at least not in your site_perl/5.8.0). If you
do not need Bio::SeqIO::staden::read functionality, I suggest removing
that part of the installation tree.
On Dec 16, 2004, at 1:21 AM, xuying wrote:
> hi all:
> I have problem with running demo scripts in bptutorial.pl
> [xuying at guyver-1 bioperl-1.4]$ perl -w bptutorial.pl 0
> The extension 'Bio::SeqIO::staden::read' is not properly installed in
> If this is a CPAN/distributed module, you may need to reinstall it on
> To allow Inline to compile the module in a temporary cache, simply
> remove the
> Inline config option 'VERSION=' from the Bio::SeqIO::staden::read
> at bptutorial.pl line 0
> INIT failed--call queue aborted, <DATA> line 1.
> I have installed io_lib in /usr/local/lib/ and installed bioperl-ext
> is there any argument i should change?
> xuying at sibs.ac.cn
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania email: amackey at pcbi.upenn.edu
415 S. University Avenue office: 215-898-1205
Philadelphia, PA 19104-6017 fax: 215-746-6697
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