[Bioperl-l] [EMBL reformatter problem with large acc_number]
heikki at nildram.co.uk
Fri Dec 17 04:48:04 EST 2004
The fix suggested in bug 1618 is now in cvs and should make it into next
On Wednesday 15 December 2004 10:35, simon andrews wrote:
> On 15 Dec 2004, at 10:07, Sebastien Moretti wrote:
> >>> Hello,
> >>> I use bioperl 1.4 on linux OS.
> >>> I try to enhance some of my EMBL flat files with the standard EMBL
> >>> reformatter
> >>> of BioPerl:
> >>> But some of my files have large accession number, like ensEMBL
> >>> accession
> >>> number, and my ID lines look like that:
> >>> ID ENSG00000156345standard; genomic DNA; UNK; 17425 BP.
> >>> So, I would like to change this and to add blank spaces before
> >>> 'standard;'.
> >> This has been discussed on the list previously and there is a patch
> >> waiting in bugzilla to sort out this behaviour
> >> http://bugzilla.bioperl.org/show_bug.cgi?id=1618
> >> A small change to EMBL.pm should have you on your way without having
> >> to
> >> change any of your code.
> >> Simon.
> > Thanks, I works with the patch but it cuts my accession number.
> See the modified patch at the bottom of the report which does exactly
> the same thing you did!
> > I hope it will be fixed automatically in the 1.5 BioPerl release !
> Hopefully it will be...
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_/ _/ _/ Heikki Lehvaslaiho heikki at_ebi _ac _uk
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