[Bioperl-l] genome analysis

Liam Elbourne liam at mmb.usyd.edu.au
Tue Feb 3 20:56:02 EST 2004

I'm looking for the quickest way to take a write a complete genbank 
entry (ie with all annotation and features) from a microbial genome 
entry, using the start and end of the area of interest. In particular 
I want to 'restart' the nucleotide positions, so that the beginning 
becomes position one in my created genbank entry, and the end becomes 
the original end minus the original start. I can see how to do this 
by loading the whole genome into a Bio::DB::GenBank object and 
iterating through it etc, but there must be a better way......

I am new to Bioperl, so if this the wrong list for this question, a 
gentle nudge in the right direction would be appreciated. The answer 
to my question above would also be appreciated!.

Liam Elbourne

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