[Bioperl-l] Building biosql database errors

Andreas Bernauer andreas.bernauer at gmx.de
Tue Feb 10 15:35:09 EST 2004

Sean Davis wrote:
> I am trying to build a biosql database on a mysql database.  I have mysql
> and biosql schema running and can successfully load some data, but for a
> proportion of the data when loading ontology or locuslink, I get the
> following (many times).  Am I doing something wrong, or is this to be
> expected?  

> -------------------- WARNING ---------------------
> MSG: insert in Bio::DB::BioSQL::TermAdaptor (driver) failed, values were
> ("GO:0042597","periplasmic space","The region between the inner
> (cytoplasmic) and outer membrane (Gram-negative bacteria) or inner membrane
> and cell wall (fungi).","") FKs (84)
> Duplicate entry 'periplasmic space-84' for key 2
I don't know, but maybe this + means something?  I guess, the db
can't handle duplicate keys.


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