GO identifiers being mis-parsed? Was Re: [Bioperl-l] Building biosql database errors

Hilmar Lapp hlapp at gmx.net
Wed Feb 11 04:14:18 EST 2004

On Tuesday, February 10, 2004, at 03:21  PM, Sean Davis wrote:

> UM-BBD-pathwayID:van
> When I changed the ':' to '-' globally in the GO flat files, I got rid 
> of
> the exceptions (Any ideas?).  I continued to have issues with 
> installing,
> though, in that the name column often contains the GO:xxxxxxx number 
> rather
> than the name.

A bug was introduced into the GO parser (dagflat in fact) that causes 
this. I fixed it in the main trunk a week or two ago, but haven't yet 
migrated the fix to the branch. Will do that too.


Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757

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