[Bioperl-l] get sequence failure

william ritchie billthebrute at yahoo.fr
Mon Feb 16 10:42:38 EST 2004


I m trying to retrieve a sequence with the following

use Bio::SearchIO;
use Bio::Perl;
use Bio::SeqIO;

my $seq_object = get_sequence("nr","NT_039208.2");

and I m getting this error:

MSG: id does not exist
STACK Bio::DB::WebDBSeqI::get_Seq_by_id
STACK Bio::Perl::get_sequence
STACK toplevel getseq.pl:9

this ID does exist, using the ncbi interface I can
retrieve it!


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