[Bioperl-l] searchio scripts
jason at cgt.duhs.duke.edu
Tue Feb 17 21:02:19 EST 2004
presumably the report in blastreport has a hit which is better than the
signif cutoff of 0.1
my $in = Bio::SearchIO->new( -format => 'blast',
-signif => 0.1,
-verbose=> 0 );
On Tue, 17 Feb 2004, Richard Rouse wrote:
> I recent installed bioperl-1.4 and am having problems with the blast report
> parsers in /examples/searchio/
> When I run:
> perl hitwriter.pl blastreport
> I get:
> Using SearchIO->new()
> 0 Blast report(s) processed.
> Output sent to file: >hitwriter.out
> I get the same result with rawwriter.pl, hspwriter.pl and custom_writer.pl
> although the htmlwriter.pl and the blast_example.pl work fine.
> Has anyone else encountered this problem and figured out how to fix it?
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
jason at cgt.mc.duke.edu
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