[Bioperl-l] Tm calculation
sbassi at asalup.org
Sat Feb 21 22:13:32 EST 2004
Barry Moore wrote:
> I would say that your first oligo (AAACCCTAGGGTTT) is complimentary, but
I've been reading the paper and searching the net for an implementation
of the Santalucia formulae. I found two interesting things:
1- Santalucia's lab has a webpage with a Tm calculator server
(http://ozone2.chem.wayne.edu/Hyther/hytherm1main.html). The code can't
be accessed since its a server side CGI script.
2- I found another web page that returns ALMOST the same results that
Santalucia page (I think the very small difference is just because of
round errors). But this one, it has it's code in JS, so the code is
Take a look here:
The code is here:
If this implementation is OK, we could just translate it to perl/python.
I am working on that right now.
//=\ Sebastian Bassi - Diplomado en Ciencia y Tecnologia, UNQ //=\
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