[Bioperl-l] Mid point rooting of a tree
czmasek at gnf.org
Thu Jan 8 13:14:03 EST 2004
You could use my rio/forester package (available at: http://www.genetics.wustl.edu/eddy/forester/).
It contains a Java program called "SDIdirectory" which can root (by various, user selectable methods) all trees in a given directory.
Option "-h" allows to root by minimizing the tree height.
If you have any questions, please feel free to email me.
Hope this helps,
Christian [czmasek at gnf.org]
> -----Original Message-----
> From: Iain Wallace [mailto:iain.wallace at ucd.ie]
> Sent: Thursday, January 08, 2004 4:18 AM
> To: bioperl-l at portal.open-bio.org
> Subject: [Bioperl-l] Mid point rooting of a tree
> Hi all,
> I was wondering if anyone knows of a command line program
> that can root
> an unrooted tree. I know of a graphical program , NJPlot, but
> I want to
> root lots of trees output from clustalw.
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