[Bioperl-l] Trouble installing bioperl-ext-1.4

Guillaume Rousse rousse at ccr.jussieu.fr
Fri Jan 9 07:38:23 EST 2004

Le Mercredi 07 Janvier 2004 02:37, Aaron J Mackey a écrit :
> This was the bit that you should have paid attention to:
> > Note (probably harmless): No library found for -lread
> Did you actually read the README, where it tells you that:
>  This extension needs the rest of the main bioperl distribution to
>  function properly.  It is only useful as a helper module for the SeqIO
>  system to read sequence trace files handled by the Staden package's
>  io_lib "read" library.  You should have this library installed prior
>  to installing Bio::SeqIO::staden::read, it's currently available at:
>    ftp://ftp.mrc-lmb.cam.ac.uk/pub/staden/io_lib/
Concerning iolib, you could add in the README than just installing os.h 
manually with other headers is not enough, as it relies on others macros 
defined in config.h. So you have to install both os.h and config.h, and to 
modify os.h to have
#include "config.h"
instead of
#include <config.h>
The wimp who made it through the eliminations on luck alone will suddenly turn 
into Bruce Lee when you're up against him
		-- Murphy's Laws of Martial Arts n°1

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