[Bioperl-l] Trouble installing bioperl-ext-1.4

Aaron J.Mackey amackey at virginia.edu
Fri Jan 9 10:16:51 EST 2004

Thanks, committed.


On Jan 9, 2004, at 7:38 AM, Guillaume Rousse wrote:

> Le Mercredi 07 Janvier 2004 02:37, Aaron J Mackey a écrit :
>> This was the bit that you should have paid attention to:
>>> Note (probably harmless): No library found for -lread
>> Did you actually read the README, where it tells you that:
>>  This extension needs the rest of the main bioperl distribution to
>>  function properly.  It is only useful as a helper module for the 
>> SeqIO
>>  system to read sequence trace files handled by the Staden package's
>>  io_lib "read" library.  You should have this library installed prior
>>  to installing Bio::SeqIO::staden::read, it's currently available at:
>>    ftp://ftp.mrc-lmb.cam.ac.uk/pub/staden/io_lib/
> Concerning iolib, you could add in the README than just installing os.h
> manually with other headers is not enough, as it relies on others 
> macros
> defined in config.h. So you have to install both os.h and config.h, 
> and to
> modify os.h to have
> #include "config.h"
> instead of
> #include <config.h>
> -- 
> The wimp who made it through the eliminations on luck alone will 
> suddenly turn
> into Bruce Lee when you're up against him
> 		-- Murphy's Laws of Martial Arts n°1
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