[Bioperl-l] Bio ::seqIO ::tigr

Marc Logghe Marc.Logghe at devgen.com
Wed Jan 28 07:38:35 EST 2004

> -----Original Message-----
> From: matthieu CONTE [mailto:m_conte at hotmail.com]
> Sent: Wednesday, January 28, 2004 11:07 AM
> To: hlapp at gmx.net; bioperl-l at bioperl.org
> Subject: Re: [Bioperl-l] Bio ::seqIO ::tigr
> Ok , I try directly with "load_seqdatabase.pl"  but there is another 
> problem.....
> [conte at bearn scripts]$  perl load_seqdatabase.pl -dbuser 
> biosql -dbpass 
> biosql -format tigr tigr 
> /home/conte/pipeline_orthologues/data/orysa_tigr.txt
> Can't locate object method "get_BioDatabaseAdaptor" via package 
> "Bio::DB::BioSQL::DBAdaptor" at load_seqdatabase.pl line 84.
> Indeed this method does not exist in Bio::DB::BioSQL::DBAdaptor....

That is because you did not say which database to use.
You should also pass the --driver argument, e.g. --driver Oracle or --driver mysql

More information about the Bioperl-l mailing list