[Bioperl-l] Bioperl: CVS and packages

Brian Osborne brian_osborne at cognia.com
Sat Jul 3 09:41:28 EDT 2004


Yes. "use lib ..." or set the PERL5LIB variable.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of James Thompson
Sent: Saturday, July 03, 2004 8:54 AM
To: 'Jonathan Manning '
Cc: 'Bioperl '
Subject: RE: [Bioperl-l] Bioperl: CVS and packages


You can do both. I have a system-wide install of Bioperl installed in
/usr/local/lib/perl5/ source, and I have the CVS tree in my home directory.
Then I just add a "use lib" statement to use the packages from CVS. It's
easy to switch back and forth from the CVS and the release versions of
BioPerl this way.

Tex Thompson
RIT Bioinformatics

> -----Original Message-----
> From: Jonathan Manning
> To: Bioperl
> Sent: 7/3/2004 6:29 AM
> Subject: [Bioperl-l] Bioperl: CVS and packages
> Hi all,
> I installed my bioperl by downloading the packages. On reflection CVS
> might have been better. Is there a way to update with CVS anyway? Or am
> I going to have to do everything again when I want to update?
> Thanks,
> Jon

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