[Bioperl-l] Help with promoter analysis

gtg974p at mail.gatech.edu gtg974p at mail.gatech.edu
Wed Jul 7 13:25:19 EDT 2004

Hi all,
I am trying to find all the Transcriptional Factor binding sites using the TFBS

perl modules and TRANSFAC matrices. When I tried running the code in the whole 
chromosome it says the sequence too long. I tried changing the 
#define SEQLEN 1000000 
in the pwm_search.h to
#define SEQLEN 100000000

and the sequence length is lesser than this. But it still throws me the same 
Can someone help me with this?

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