[Bioperl-l] Flat databases

S.Paul s.paul at surrey.ac.uk
Wed Jul 14 17:35:51 EDT 2004

Hi Everybody:

I was trying to follow the HowTo for Flat databases and try to run the following command:
bp_bioflat_index.pl -c -l c:\research\perl\genbank -d g
enbank -i flat -f genbank data/*.gbk

I installed the bioflat_index.pls script and then tried to run the above command but am getting the following error message:


C:\research\perl\genbank>bp_bioflat_index.pl -c -l c:\research\perl\genbank -d g
enbank -i flat -f genbank data/*.gbk

------------- EXCEPTION  -------------
MSG: Can't locate Bio/DB/Flat/Flat/genbank.pm in @INC (@INC contains: C:/Perl/li
b C:/Perl/site/lib .) at (eval 4) line 2.
BEGIN failed--compilation aborted at (eval 4) line 2.

STACK Bio::DB::Flat::new C:/Perl/site/lib/Bio/DB/Flat.pm:140
STACK toplevel C:\research\perl\genbank\bp_bioflat_index.pl:89


Thanks in advance for the help


Sujoy Paul, PRISE Centre, UniS, s.paul at surrey.ac.uk

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