[Bioperl-l] All-vs-all BLAST
james.wasmuth at ed.ac.uk
Tue Jul 20 10:57:48 EDT 2004
The documentation for TCoffee and Clustalw are not available through
docs 1.4. Though I'll stand corrected.
Paulo Almeida wrote:
> You want to compare all the possible pairs of sequences in the set? If
> that is it, you can try putting all the sequences in an array, blast
> the first against all the others, shift it out of the array and then
> repeat the process until the array is empty. If it's a multiple
> alignment you want, you could probably use
> (I was going to link to the webpage, but that link is broken in the
> Bioperl webpage).
> Peter J Stogios wrote:
>> I'm looking for a script to do an all-vs-all BLAST comparison of a
>> set of sequences.
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