[Bioperl-l] Bio::Graphics::Panel

michael watson (IAH-C) michael.watson at bbsrc.ac.uk
Wed Jul 21 04:54:13 EDT 2004


When using Bio::Grahpics::Panel and Bio::SeqFeature::Generic to render
my BLAST hits as a PNG image, I want ALL HSP's to be the same color, no
matter what their score or e-value is.

How do I do that?  I have tried setting $hsp->evalue("1E-40") (arbitrary
high value) but it has no effect.  Which part of the HSP object does
Panel use to figure out what color it should draw it?  Some of my HSPs
are so pale they are almost invisible.


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