[Bioperl-l] compiling ext-1.4 on solaris 2.9
Aaron J. Mackey
amackey at pcbi.upenn.edu
Thu Jul 22 08:08:05 EDT 2004
1. get a fresh, clean copy
2. cd into Bio/Ext (bypasses building SeqIO/staden)
3. do "perl Makefile.PL; make; make test" and send me the (voluminous)
On Jul 21, 2004, at 11:08 PM, Michal Kurowski wrote:
> It seems Bioperl-ext-1.4 is not actually easy to compile on Solaris.
> I must say it is a 64-bit, iThread Perl but still ;-)
> Other XS modules were built with no problems.
> I'm interested in Align module only. I followed the instructions and
> compilation went OK. "make test" is not so easy ...
> PERL_DL_NONLAZY=1 /usr/local/bin/perl "-Iblib/lib" "-Iblib/arch"
> Can't load 'blib/arch/auto/Bio/Ext/Align/Align.so' for module
> ld.so.1: /usr/local/bin/perl: fatal: relocation error:
> file blib/arch/auto/Bio/Ext/Align/Align.so:
> symbol bp_sw_error_on: referenced symbol not found
> line 229. at test.pl line 10
> My "perl -V" output is given below.
> I hope someone has seen this before ...
> Michal Kurowski
> <mkur at poczta.gazeta.pl>
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania email: amackey at pcbi.upenn.edu
415 S. University Avenue office: 215-898-1205
Philadelphia, PA 19104-6017 fax: 215-746-6697
More information about the Bioperl-l