[Bioperl-l] bioperl installation

Brian Osborne brian_osborne at cognia.com
Thu Jul 22 11:22:22 EDT 2004


I don't think Inline is installed by default along with Perl, you'll need to
install it. Mind you, you don't need to install all of Inline, just the
parts that your installation attempt complains about.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Xiang Deng
Sent: Thursday, July 22, 2004 10:01 AM
To: bioperl-l at bioperl.org
Subject: [Bioperl-l] bioperl installation

To whom it may concern,

I am trying to install bioperl locally under my peronal folder. The  core
modules were successfully installed. I ran through a simple perl script to
use bio::perl or bio::seq without complain. but I got problem with
installing bioperl-ext-1.4.

When I installed core modules I used this
>perl Makefile.PL LIB=/my_local_directory/

My first question is whether or not I have to use the same way to deal
with ext modules too and I can use the same directory or a separate one.

Actually I tried both and both failed with error message as follows:

mendel 207% perl Makefile.PL
Checking if your kit is complete...
Looks good
Writing Makefile for Bio::Ext::Align
ERROR from evaluation of
Can't locate Inline/MakeMaker.pm in @INC (@INC contains:
/usr/local/lib/perl5/5.6.1/IP27-irix /usr/local/lib/perl5/5.6.1
/usr/local/lib/perl5/site_perl/5.6.1 /usr/local/lib/perl5/site_perl
/v0/users/deng0007/my_bioperl/bioperl-ext-1.4 .) at ./Makefile.PL line 1.
BEGIN failed--compilation aborted at ./Makefile.PL line 1.

could you please let me know what I did wrong or miss in there? thanks a


Department of Pharmacology and Cancer Biology
Duke University Medical Center
Durham, NC 27710
Phone: 919-4792339

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