[Bioperl-l] ensembl database

Jonathan Manning bmb9jrm at bmb.leeds.ac.uk
Wed Jul 28 06:34:48 EDT 2004

I'd advise you to get hold of the Ensembl API if you can- that's what
I've been using and would seem to be what you need. It's available via
CVS from the Ensembl site.


On Wed, 2004-07-28 at 11:22, Stuart Gillies wrote:
> Hi, i am trying to write a bio perl script to query the ensembl database. i 
> am trying to retrieve data associated with a specific region on the mouse 
> genome chromosome 17: chr17:31,132,104-35,332,226. i want a list of ensembl 
> genes in that region, with as much info as possible, such as transcription 
> start point, ensembl gene ID,etc
> i also really need a list of conserved sequences (which should be found in 
> the compara database) for that mouse genomic region.
> any help would be great
> stuart gillies
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