[Bioperl-l] pdb files/structure system

Douglas Kojetin djkojeti at unity.ncsu.edu
Wed Jul 28 13:03:42 EDT 2004

Hi All-

Can anyone point me towards a tutorial dealing with using Bioperl's  
Structure system?  I'm able to read in a PDB file and print out a  
sequence, but I cannot figure out how to extract atoms or coordinates  
from the one line examples given here:


Using that example, I've tried setting $res to a number of things (1,  
MET1, MET-1, MET, etc.), but I think it's look for something more  
sophisticated (i.e. input from another system module)?

Is there a HOWTO under development (or in the near future) for the  
Structure system?


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