[Bioperl-l] Biosql documentation request

Hilmar Lapp hlapp at gmx.net
Fri Jun 4 02:19:44 EDT 2004

Brian, if I understand the output correctly it only documents the 
schema elements. Do you feel that the ERD (doc/biosql-ERD.pdf) does not 
fulfill this purpose well enough?

The ERD diagram actually doesn't show the unique key constraints, so 
that would be a difference indeed.


On Thursday, June 3, 2004, at 05:56  AM, Brian Osborne wrote:

> Bioperl-l,
> Dave Howorth has provided a detailed critique of the bioperl-db/biosql
> documentation which I'm working through. One thing that he noticed was 
> that
> the Biosql file doc/biosql.html was out-of-date. This file was created 
> by
> running a script called postgres_autodoc.pl on a Postgres instance of 
> the
> biosql schema. Can anyone provide me with a current version of this 
> file? I
> run biosql on Mysql myself and I haven't found a script or utility
> equivalent to postgres_autodoc.pl. postgres_autodoc.pl is available at
> http://www.rbt.ca/autodoc/.
> Brian O.
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757

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