[Bioperl-l] how to blast

Jonathan Manning bmb9jrm at bmb.leeds.ac.uk
Mon Jun 7 10:08:07 EDT 2004


After creation of your remoteblast factory object, you can limit by
species like:

$Bio::Tools::Run::RemoteBlast::HEADER{'ENTREZ_QUERY'} = 'Homo sapiens

See the example in the documentation on the Bioperl site.


On Mon, 2004-06-07 at 14:48, aditi gupta wrote:
> hi,
> i wish to know how to use the blast module in bioperl......i have a gene sequence, and i have to blast it separately , with all the species listed in the 'limit query' by selecting <specie name>.'all organisms' are displayed by default.but how to perform blast taking different species each time.....
> please help.....
> thanx
> -aditi
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