[Bioperl-l] remote blast vs standalone blast

Remo Sanges sanges at biogem.it
Mon Jun 7 12:17:57 EDT 2004

On Jun 7, 2004, at 6:06 PM, <jwon at ucalgary.ca> wrote:

> hi,
> in the remote blast, you are able to limit the blast search by 
> organism by
> specifying the parameter ENTREZ_QUERY according to NCBI's URL api.  is 
> this
> also possible using the standaloneblast object.  i have a large number 
> of
> blasts to do, and do not want to monopolize the resources at NCBI.  can
> anyone help me with this?

AFAIK you should use organism-specific flat file against which run your 


More information about the Bioperl-l mailing list