[Bioperl-l] unigene object from blast report

Sean Davis sdavis2 at mail.nih.gov
Mon Jun 7 18:39:53 EDT 2004


I don't think this has been answered yet, but I don't think there is an easy
to do this "directly" from bioperl.  However, the file Hs.gb_cid_lid (for
human) maps genbank accession to cluster id (and library id), so you can
download it (ftp://ftp.ncbi.nlm.nih.gov/repository/UniGene/), read the first
two fields into a hash, and voila, you have your mapping.  Note that the
cluster ids do not have the two-letter species code.

----- Original Message -----
From: <jwon at ucalgary.ca>
To: <bioperl-l at portal.open-bio.org>
Sent: Monday, June 07, 2004 12:09 PM
Subject: [Bioperl-l] unigene object from blast report

> Hi,
> is it possible to elicit unigene information from the results of a BLAST
> report using bioperl?  in the web interface to NCBI, a BLAST report
> a UNIGENE icon/link to the BLAST hit's UNIGENE information.  i want to
> this same information using bioperl.  can anyone help me with this?
> thanks,
> jack
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