[Bioperl-l] Making gff files for ucsc or ncbi build

Lincoln Stein lstein at cshl.edu
Mon Jun 7 13:22:03 EDT 2004

There is a script in the Generic Genome Browser 
(http://www.gmod.org/ggb) which will convert gene entries from UCSC 
format into GFF, and another script that will convert from NCBI 
*GenBank* files into GFF.  In recent versions of bioperl, there is a 
script in scripts/Bio-DB-GFF that will also convert from UCSC to GFF.


On Wednesday 02 June 2004 04:02 pm, Starr Hazard wrote:
> I cannot see any replies to your question. Did you get it solved?
> Starr
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Lincoln D. Stein
Cold Spring Harbor Laboratory
1 Bungtown Road
Cold Spring Harbor, NY 11724

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