[Bioperl-l] compiling bioperl-ext
Aaron J. Mackey
amackey at pcbi.upenn.edu
Wed Jun 9 16:46:05 EDT 2004
1) Are you starting with a clean build directory?
2) Does installing other compiled Perl modules work for you (e.g.
Data::Dumper or Storable)?
That's a pretty arcane error, and if the answer to #2 is "no", then I
don't think we can help you.
On Jun 9, 2004, at 4:32 PM, luisa pugliese wrote:
> Hi to all,
> looking at the messages of these days I saw there are other people
> problems compiling bioperl-ext.
> I tryed to do it on AMD64 with Mandrake 9.2 linux distribution and I
> got the following error:
> LD_RUN_PATH="" gcc -shared Align.o -o
> ../blib/arch/auto/Bio/Ext/Align/Align.so libs/libsw.a -lm
> /usr//bin/ld: libs/libsw.a(aln.o): relocation R_X86_64_32 can not be
> when making a shared object; recompile with -fPIC
> libs/libsw.a: could not read symbols: Bad value
> Does anybody knows what should I do in order to succesfully compile it?
> Thank you to all
> Luisa Pugliese, Ph.D.
> luisa.pugliese at safan-bioinformatics.it
> S.A.F.AN. BIOINFORMATICS
> Corso Tazzoli 215/13 -10137 Torino - ITALY
> tel +39 011 3026230
> cell. +39 333 6130644
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania email: amackey at pcbi.upenn.edu
415 S. University Avenue office: 215-898-1205
Philadelphia, PA 19104-6017 fax: 215-746-6697
More information about the Bioperl-l