[Bioperl-l] writing and parsing annotations

Jason Stajich jason at cgt.duhs.duke.edu
Mon Jun 14 13:37:31 EDT 2004


On Mon, 14 Jun 2004, Danny Tuckwell wrote:

> Dear Biopelr,
>   I'm having a bit of a problem updating genome annotations. I am
> writing a script to map old in-house produced annotations onto new
> releases of genomes. I encounter a problem when the new release is
> reverse complement to the in-house version. Basicly I'm trying to find
> the Bio::Location or Bio::SeqFeature terms for "the complement" term
> that you get in the annotations for sequences so I can parse and change
> the annotation. I'd be grateful for any help, Thanks, Danny
> Dr. Danny Tuckwell
> Head of Bioinformatics
> F2G Ltd.
> PO Box 1
> Eccles
> Manchseter
> M30 0BH
> UK
> Tel: 44 161 606 7252
> Fax: 44 161 785 1273
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Jason Stajich
Duke University
jason at cgt.mc.duke.edu

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