[Bioperl-l] genbank to gff and vice versa

Jason Stajich jason at cgt.duhs.duke.edu
Mon Jun 21 01:24:39 EDT 2004

We take each feature from a genbank file and write it to a
GFF writer (which takes features as input).

my $out = Bio::Tools::GFF->new(-gff_version => 2);
for my $feature ( $seq->get_SeqFeatures ) {

We don't have a Gff.pm module - we have a GFF.pm which is
properly called Bio::Tools::GFF and is in Bio/Tools/GFF.pm.

On Sun, 20 Jun 2004, Sucheta Tripathy wrote:

> Hello,
> I was wondering which module most effectively does the conversion of
> genbank to gff and vice versa.
>   I downloaded a script which needs Gff.pm, and whan I wanted to install it
> with CPAN it could not locate. SO I downloaded the Gff.pm from some other
> source, but it does not seem to do the job.
> Any suggestions.
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Jason Stajich
Duke University
jason at cgt.mc.duke.edu

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