[Bioperl-l] genbank to gff and vice versa

Marc Logghe Marc.Logghe at devgen.com
Mon Jun 21 10:46:11 EDT 2004

> Is the reverse flow possible?
Only if you have your (fasta) sequence sitting somewhere you can turn a GFF line into a feature and add it.
my $seq = $fasta->next_seq;
my @feat;
while (<GFF>)
  next if /^$/;
  puch @feat, Bio::SeqFeature::Generic->new( -gff_string => $_ );

or something alike.


Marc Logghe, Ph.D.
Senior Scientist
Scientific Computing Group
Devgen nv
Technologiepark 9
B - 9052 Ghent-Zwijnaarde
Tel: +32 9 324 24 88
Fax: +32 9 324 24 25

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