[Bioperl-l] new Bio::Installer modules in bioperl-run
todd.harris at cshl.edu
Mon Mar 1 08:56:00 EST 2004
Hi Albert -
This would be a nice convenience.
Do these handle the (potentially) many system-dependent issues as well? Or
can you just generically pass configure/make/test/install paramaters to the
installer object? Also, a superclass would be nice that creates an installer
factory for those wishing to build lots of things from a single script.
> On 3/1/04 7:33 AM, avilella wrote:
> I've been playing with a set of modules to make the installation of
> bioperl external programes easier.
> These are modules with methods to basically download, decompress,
> compile and install the program that is meant to be called by bioperl.
> For example, for TCoffee, there would be a script in bioperl-run/scripts
> use strict;
> use Bio::Installer::TCoffee;
> # Install in the directory where the script is called
> use Cwd;
> my $destination_install_dir = getcwd;
> my $installer = new Bio::Installer::TCoffee(
> -destination_install_dir =>
> that would download, decompress and compile TCoffee to the preferred
> Feedback is welcomed,
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
More information about the Bioperl-l