[Bioperl-l] CpG frequency

Brian Osborne brian_osborne at cognia.com
Fri Mar 5 12:20:30 EST 2004


Yes, there's a script in the scripts/seqstats/ directory called gccalc.PLS
that will do this.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Gyoergy Abrusan
Sent: Friday, March 05, 2004 12:07 PM
To: bioperl-l at portal.open-bio.org
Subject: [Bioperl-l] CpG frequency

Dear All,

I am a biologiist with quite "moderate" knowledge in bioinformatics. I
would like to ask whether a script for estimating CpG frequencies (no.
of CG pairs/no. of nucleotides) in files containing several DNA
sequences (fasta format) exist in the bioperl database.

Thanking you in advance.
kind regards,

Gyorgy Abrusan

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