[Bioperl-l] CpG frequency

Kevin Roland Viel kviel at emory.edu
Fri Mar 5 12:44:44 EST 2004

I am a novice at perl, but it seems to me that, in general, you can
compare the lengths of the original fasta to that with GC or CG pairs
"cut" out.  If you translate CpG to any other byte character then you will
need to multiple by 2, unless you want the number of pairs.



Kevin Viel
Department of Epidemiology
Rollins School of Public Health
Emory University
Atlanta, GA 30322

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